Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916829.1_cds_XP_016466520.1_59364
CDS Infomation

[gene=LOC107789259] [db_xref=GeneID:107789259] [protein=pumilio homolog 1-like isoform X2] [protein_id=XP_016466520.1] [location=complement(join(130677..130714,131663..131837,132324..132518,138291..138401,138484..138696,147965..148072,153356..153497,153586..155039,157167..157175))] [gbkey=CDS]
Sequence

ATGATTCAGGATGGTACAAGTCAAGCAACATCTACTGCGAGGCATCCATCTTGTCTACCT
AGCCGTGCATTCGATGATGTTGTTGATCCTTCTGGATCCCAATTTGCTCATCTCCATCAC
GAGTTGGCATCTTTGGATGCATTACATTCTCAGGCAAAGATTCAAGGCACAACTGCACTC
CAAAGTGTCACCACATCAGTCTGTCAATCTTATGCTTCTGCTTTGGGCGCATCATTGTCA
CGAAGTACCACCCCTGACCCTCAGCTTGTAGCTAGAGCTCCTAGTCCTCGTATTTCTTCT
GCTGGAGGAGGGAGGATAAGCTCAATAGATAAAAGAAACGTAAATGTCCCTAACACATCG
GAGAACGTTCCATCTAATATGGGGGAGCATGCTGATCTGGTAACTGCATTGTCTGGCATG
GGTCTGTCAGTGCATGGTATGGGAGATGTACGAAAGCATCAAAATACTCAAAATCATAAT
GAGATTGATAATCATCAGAACCTCTTTCATCTGCAGAGGGATCAAAATCCTATGAAGCAG
CATTCCTATGCGAACAAGTCTGAATCAGTTCAGTTTCGTAAATCTGCATGTTCATCTGCT
GCTTCATACTTGAAAGGGCCTTCTACCCCAACTCTCACTAGTGGAGGAAGTTCACCATCT
CAATATCCAACTACTGATAATCCTAATTCAATGTTTTCTCCATATGGTTTAGGAGGTTAT
GATATGAACCCTTCATCACCATCGATGTTGGAAAACCAACTTGGGGGTGGTAATTTTCCT
TCATTATTTGAAAATATTTCTGCTGGGGTAACAATGGGTGCCTGTGGAATTGATCCTCGA
GCAATGGCAGGAGGCTTGAATTTTTGTCCTAATCTATTGGCTGCTGCAGCTGAATTACAG
AACATTAATAGACTTGATGGTCAGACCTTGGGTAGATCACTGCAAATACCTCAGGTGGAT
CCCATGTACCTTCAGTACTTGAGATCAACTGAGTATCTTTCTGCTCAGCTATCAGCTGTT
AATGACCCAACTGTTAACAGGGAATCTCTAGGCAGTTCATACATGGATTTGCTTGAGCTT
CAGAAAGCATATTTTGGGGTACTGCTTGCATCTCAAAAATCAGAGTATGGTCTTTCGTGT
CTTGGAAAATCTGGTGGCTTAAATAATGGTTACTATGGGAATATAGCACTTGGCGTTAAT
ATGTCATATCCTGGGAGCCCTTTGGCTGGTGCAGCTCTTCACAATTCTCCCTTTTGGCCT
GGTAGTCCTGTAAGGTATGGCGAAAGGAACATGCATTTTCCTTCAGGGATGAGGAACTTA
TCTGGTGTAATGGGAGCTTGGCATTCCGAGTCTGGTTCTAACTTGGGAGAAAGCTTTGCT
TCGACATTATTGGATGAGTGTAAGAGCAACAAAAGTAAGTGTTTTGAGTTGTTGGAGATT
GAAGGCCATGTTGTTGAGTTCAGTGCGGACCAGTATGGAAGCAGGTTCATTCAACAGAAG
TTGGAGACTGCTACAACAGGGGAGAAGAACATGGTCTTCTGTGAAATTATGAAACAAGCT
CTTTCATTGGTGACTGATGTGTTCGGTAATTATGTGATCCAGAAGTTTTTTGAACATGGA
AGTGCATCTCAGATTAGAGAACTAGCTGACCAGCTCAATGGGCATGTTCTAACACTTTCT
CTTCAAATGTATGGTTGCCGAGTGATCCAGAAGGCCATAGAGGTTGTTGATCTGGACCAG
CAAGCCAAAATGGTCACAGAGCTTGATGGTCATGTTATGCGCTGTGTTAGAGATCAGAAT
GGGAATCATGTTATCCAGAAGTGTATTGAATGCGTTCCAGAGGATGCCATCCAGTTCATT
ATTTCCACATTTTATGATCAAGTTGTGACATTGTCCACCCATCCATATGGATGTCGGGTC
ATACAGAGAGTCTTGGAACACTGCCATAATCCTGAAACACTGAGCATTGTCATGAAGGAG
ATTTTGCAATCTGTTTGCATGCTGGCGCAAGATCAATATGGGAATTATGTTGTTCAGCAT
GTATTGGAACATGGAAACCCAGAGGAGCGCACTTCTATAATTAACAAACTGATGGGGCAG
ATAGTTCAGATGAGCCAGCAGAAATTTGCCTCGAATGTTGTGGAGAAGTGTTTATCCTTT
GGAACTCCTGAAGAACGCCAGACCTTGGTAAATGAGATTCTTGGCTCTGAAGATGAAAAT
GATCCTCTTCAGGTGATGATGAAAGATCAGTTCGCAAACTATGTTGTACAGAAAGTGCTG
GAGACGTGTGATGACCAGCAACTTGAACTGATTCTCAACCGAATAAAGGTTCATCTAAAT
GCTCTGAAGAAATATACCTACGGAAAGCACATAGTTGCCCGTGCGGAGAAACTAGTTGCT
GCTGGAGAGAGGAGGATCAGTGATCTGGCTTCTTATTCTGCTTAG

Peptide Sequence

PEP ID

XP_016466520.1
PEP Infomation

PREDICTED: pumilio homolog 1-like isoform X2 [Nicotiana tabacum]
Sequence

MIQDGTSQATSTARHPSCLPSRAFDDVVDPSGSQFAHLHHELASLDALHSQAKIQGTTAL
QSVTTSVCQSYASALGASLSRSTTPDPQLVARAPSPRISSAGGGRISSIDKRNVNVPNTS
ENVPSNMGEHADLVTALSGMGLSVHGMGDVRKHQNTQNHNEIDNHQNLFHLQRDQNPMKQ
HSYANKSESVQFRKSACSSAASYLKGPSTPTLTSGGSSPSQYPTTDNPNSMFSPYGLGGY
DMNPSSPSMLENQLGGGNFPSLFENISAGVTMGACGIDPRAMAGGLNFCPNLLAAAAELQ
NINRLDGQTLGRSLQIPQVDPMYLQYLRSTEYLSAQLSAVNDPTVNRESLGSSYMDLLEL
QKAYFGVLLASQKSEYGLSCLGKSGGLNNGYYGNIALGVNMSYPGSPLAGAALHNSPFWP
GSPVRYGERNMHFPSGMRNLSGVMGAWHSESGSNLGESFASTLLDECKSNKSKCFELLEI
EGHVVEFSADQYGSRFIQQKLETATTGEKNMVFCEIMKQALSLVTDVFGNYVIQKFFEHG
SASQIRELADQLNGHVLTLSLQMYGCRVIQKAIEVVDLDQQAKMVTELDGHVMRCVRDQN
GNHVIQKCIECVPEDAIQFIISTFYDQVVTLSTHPYGCRVIQRVLEHCHNPETLSIVMKE
ILQSVCMLAQDQYGNYVVQHVLEHGNPEERTSIINKLMGQIVQMSQQKFASNVVEKCLSF
GTPEERQTLVNEILGSEDENDPLQVMMKDQFANYVVQKVLETCDDQQLELILNRIKVHLN
ALKKYTYGKHIVARAEKLVAAGERRISDLASYSA

Transcript Sequence

Gene sequence data has not been registered.